Publications

2017

• Barr JJ. A bacteriophage journey through the human body Immunological Reviews 2017; 279(1):106-122
  DOI: 10.1111/imr.12565 · [Download PDF]
• Nguyen S, Baker K, Padman BS, Patwa R, Dunstan RA, Weston TA, Schlosser K, Bailey B, Lithgow T, Lazarou M, Luque A, Rohwer F, Blumberg RS, Barr JJ. Bacteriophage transcytosis provides mechanism to cross epithelial cell layers mBio 2017; 8(6)
  DOI: 10.1128/mBio.01874-17 · [Download PDF]
• Schooley RT, Biswas B, Gill JJ, Hernandez-Morales A, Lancaster J, Lessor L, Barr JJ, Reed SL, Rohwer F, Benler S, Segall AM, Taplitz R, Smith DM, Kerr K, Kumaraswamy M, Nizet V, Lin L, McCauley MD, Strathdee SA, Benson CA, Pope RK, Leroux BM, Picel AC, Mateczun AJ, Cilwa KE, Regeimbal JM, Estrella LA, Wolfe DM, Henry MS, Quinones J, Salka S, Bishop-Lilly KA, Young R, Hamilton T. Development and use of personalized bacteriophage-based therapeutic cocktails to treat a patient with a disseminated resistant Acinetobacter baumannii infection Antimicrobial Agent. Chemotherapy. 2017; 61(10)
  DOI: 10.1128/AAC.00954-17 · [Download PDF]

2016

• Quistad SD, Grasis JA, Barr JJ, Rohwer FL. Viruses and the origin of microbiome selection and immunity. ISME J. 2016;
  DOI: 10.1038/ismej.2016.182
• Natasha Bonilla, Maria Isabel Rojas, Giuliano Netto Flores Cruz, Shr-Hau Hung, Forest Rohwer, Jeremy J. Barr​. Phage on tap–a quick and efficient protocol for the preparation of bacteriophage laboratory stocks PeerJ 2016;
  PMID: 27547567 · [Download PDF]
• Barr JJ, Dutilh BE, Skennerton CT, Fukushima T, Hastie ML, Gorman JJ, Tyson GW, Bond PL. Metagenomic and metaproteomic analyses of Accumulibacter phosphatis-enriched floccular and granular biofilm. Environ. Microbiol. 2016; 18(1):273-87
  PMID: 26279094

2015

• Barr JJ, Auro R, Sam-Soon N, Kassegne S, Peters G, Bonilla N, Hatay M, Mourtada S, Bailey B, Youle M, Felts B, Baljon A, Nulton J, Salamon P, Rohwer F. Subdiffusive motion of bacteriophage in mucosal surfaces increases the frequency of bacterial encounters. Proc. Natl. Acad. Sci. U.S.A. 2015; 112(44):13675-80
  PMID: 26483471 · [Download PDF]
• Skennerton CT, Barr JJ, Slater FR, Bond PL, Tyson GW. Expanding our view of genomic diversity in Candidatus Accumulibacter clades. Environ. Microbiol. 2015; 17(5):1574-85
  PMID: 25088527
• Tariq MA, Everest FL, Cowley LA, De Soyza A, Holt GS, Bridge SH, Perry A, Perry JD, Bourke SJ, Cummings SP, Lanyon CV, Barr JJ, Smith DL. A metagenomic approach to characterize temperate bacteriophage populations from Cystic Fibrosis and non-Cystic Fibrosis bronchiectasis patients. Front Microbiol 2015; 6:97
  PMID: 25741327

2014

• Dutilh BE, Cassman N, McNair K, Sanchez SE, Silva GG, Boling L, Barr JJ, Speth DR, Seguritan V, Aziz RK, Felts B, Dinsdale EA, Mokili JL, Edwards RA. A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes. Nat Commun 2014; 5:4498
  PMID: 25058116

2013

• Barr JJ, Youle M, Rohwer F. Innate and acquired bacteriophage-mediated immunity. Bacteriophage 2013; 3(3):e25857
  PMID: 24228227 · [Download PDF]
• Barr JJ, Auro R, Furlan M, Whiteson KL, Erb ML, Pogliano J, Stotland A, Wolkowicz R, Cutting AS, Doran KS, Salamon P, Youle M, Rohwer F. Bacteriophage adhering to mucus provide a non-host-derived immunity. Proc. Natl. Acad. Sci. U.S.A. 2013; 110(26):10771-6
  PMID: 23690590 · [Download PDF]

2011

• Slater FR, Singer AC, Turner S, Barr JJ, Bond PL. Pandemic pharmaceutical dosing effects on wastewater treatment: no adaptation of activated sludge bacteria to degrade the antiviral drug oseltamivir (Tamiflu®) and loss of nutrient removal performance. FEMS Microbiol. Lett. 2011; 315(1):17-22
  PMID: 21133989

2010

• Barr JJ, Slater FR, Fukushima T, Bond PL. Evidence for bacteriophage activity causing community and performance changes in a phosphorus-removal activated sludge. FEMS Microbiol. Ecol. 2010; 74(3):631-42
  PMID: 20883494
• Barr JJ, Cook AE, Bond PL. Granule formation mechanisms within an aerobic wastewater system for phosphorus removal. Appl. Environ. Microbiol. 2010; 76(22):7588-97
  PMID: 20851963
• Barr JJ, Blackall LL, Bond P. Further limitations of phylogenetic group-specific probes used for detection of bacteria in environmental samples. ISME J 2010; 4(8):959-61
  PMID: 20357832